I am looking for a protocol for total DNA extraction from enriched broth samples (enriched from soil and sludge samples). Could the methods available for DNA extraction from soil samples be used as well or i should use some other protocol?
I am doing the DNA extraction from my samples (enriched broth samples from bovine rumen and/or sludge) with the FastDNA SPIN Kit for soil, which is yielding enough DNA for downstream analysis. However, if your microbes of interest have very robust cell walls an additional freeze-thaw step (at -80°C) could help to increase the yield. There are, however, large differences in the DNA depending on the used DNA-extraction protocol.
One possibility for you could be to ask the companies for a trial set that they sometimes give away for free and in this way you could try some different approaches.
I am doing the DNA extraction from my samples (enriched broth samples from bovine rumen and/or sludge) with the FastDNA SPIN Kit for soil, which is yielding enough DNA for downstream analysis. However, if your microbes of interest have very robust cell walls an additional freeze-thaw step (at -80°C) could help to increase the yield. There are, however, large differences in the DNA depending on the used DNA-extraction protocol.
One possibility for you could be to ask the companies for a trial set that they sometimes give away for free and in this way you could try some different approaches.