We aim to cleave our DNA probe from a AP site (apurinic/apyrimidinic site) just rising up the temperature. What is the lowest temperature required to realise the cleavage, 50, 60, 70, 80, or 90 ℃?
Temperature may not be a great way to cleave DNA oligo's at an abasic site. I think you will have to use 90 degrees for 20 minutes or so to get significant cleavage depending upon the sequence. This is unlikely to cleave 100% of your oligo.