What is the best way to make dataset for subcellular localization of protein sequences?

11 October 2018 1 9K Report

I am trying to make dataset in order to predict subcellular localization of protein sequences. I have been downloading sequences from UniProt and ran weka, but accuracy is constantly appearing around 30-40%. Is there any way to improve it by making dataset accordingly?

Rajnish Kumar

It is suggestive to write a program (may be in perl) which can identify the subcellular localization Information line (by identifying the keyword) from the uniprot files and export it to a separate file. By this way you can collect the desired information accurately.

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