Can anyone suggest which software to be used to calculate physico-chemical properties of protein sequences?

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How to label the amino acids involved in the protein protein interaction using PyMol software, as shown in expected labels.png?

I want to show the protein-protein interaction as shown in the "expected labels.png" using PyMol software, but unable to do it. Instead, I ended up getting the image shown as "pymol label.png". I...

29 August 2020 1,224 8 View

What should be the problem here in the attached screenshot of python shell from Autodock?

I am performing protein-protein docking using Autodock tools (following https://www.researchgate.net/post/Problem_in_using_Cygwin_commands_for_running_Autodock). I have tried by adding Kollman...

09 August 2020 6,769 4 View

What does this error mean, does the problem reside in protein itself or there is something else to worry about?

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23 April 2020 5,205 1 View

I am getting an error while running "make" command in AutoDock4 in ubuntu (virtual box), can anyone have a solution for it?

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How to increase the MAX_RECORDS in constants.h file of autodock 4.0.1 using Windows 10 ?

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05 April 2020 3,880 6 View

How to iterate a dataframe in a way that each row will be read and test against the svm model and in another file, give predictions of each row?

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Why do the best performance of svm tuned model and the prediction accuracy of the same model differ from each other?

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I want to make multiple ROC curves in a single plot using PRROC library. What type of input will go for the same?

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Error in UseMethod("predict"): no applicable method for 'predict' applied to an object of class "tune". How to overcome this error?

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What is the best way to make dataset for subcellular localization of protein sequences?

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How to learn more about SPSS and its Application?

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Can I base on reverse DNA sequences to perform alignment, convert to amino acids and GenBank submission?

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Baseline drift in HPLC? What causes this?

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Text-Communication from the M1 Hand Area using BCI—and then there is Elon Musk?

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Has anyone applied Python in the field of textile engineering for data analysis, automation, or smart textiles?

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How can I use the cif data obtained from rietveld refinement extracted via gsas2, for microstructural analysis using ETEX software?

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How to confirm the site-directed mutagenesis result without performing NGS?

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How are iso-frequency contours plotted?

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How to prepare the nanoparticle treated fungal sample for Environmental SEM analysis?

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How to normalize and take the significance of the MTT OD values with 3 replicates for the same cell-line?

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Kyle M. Stiers

Which properties? If you're looking for basic properties Expasy ProtParam is really good.

https://web.expasy.org/protparam/

Kévin Vervier

Is a resource like PubChem of any use? You can use the R package rpubchem(https://cran.r-project.org/web/packages/rpubchem/rpubchem.pdf) to download information from this database.

Walter Douglas Fairlie

The Protein Parameters tool (http://www.protparam.net) does everything that Expasy ProtParam does but also lets you input DNA sequences for translation and as well as directly enter OD280nm for online calculation of protein concentration. Much faster response time too....