Can anyone suggest which software to be used to calculate physico-chemical properties of protein sequences?

More Hiteshree Buch's questions See All

I am getting an error while running "make" command in AutoDock4 in ubuntu (virtual box), can anyone have a solution for it?

http://mgldev.scripps.edu/pipermail/autodock/2009-February/005150.html I am following the above link because I also got the error in .dlg file of autodock that MAX_RECORDS of constants.h file has...

15 April 2020 2,977 2 View

How to increase the MAX_RECORDS in constants.h file of autodock 4.0.1 using Windows 10 ?

I am performing protein-protein interaction using AutoDock 1.5.6, but in .dlg file, it throws an error "ERROR: 2328 records read in, but only dimensioned for 2048. Change "MAX_RECORDS" in...

05 April 2020 3,394 6 View

How can I run weka using command line in Windows?

I am trying to run weka, but unfortunately its memory is getting full and showing the error of which screenshot I have attached here. I want to run weka using command "java-Xmx128m-classpath..."...

20 August 2018 9,566 2 View

Does anyone have experience with fixing S. cerevisiae cells for both electron and fluorescence microscopy?

I'm interested to learn if anyone knows a procedure to fix S. cerevisiae cells for electron and fluorescence microscopy, using the same fixative for both, and how long can I store the fixed cells...

27 June 2013 7,198 2 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

Do we need to write protocol for a second study of a systematic review that has been registered and published?

I have conducted and published a systematic review and meta-analysis research with the topic related to public health and health pomotion (protocol was registed in PROSPERO). Now we want to...

03 March 2021 8,920 3 View

How to increase a model accuracy ?

dear community, my model is based feature extraction from non stationary signals using discrete Wavelet Transform and then using statistical features then machine learning classifiers in order to...

03 March 2021 6,994 5 View

Do I need to do linear regression before running mediation analysis using PROCESS MACRO by Hayes ?

I just wanted to check if I need to run a linear regression separately if I am using PROCESS MACRO to run mediation analysis. Thank you.

02 March 2021 4,359 3 View

Sample dilution for quantitative analysis using ELISA?

If the detection range is in ng/ml but the reference range is in ug/ml for a molecule or protein in serum or plasma .how to dilute and what is the initial volume to be taken for quantitative analysis

02 March 2021 7,670 3 View

Is There Any Feasible Method To Test Fluorescent Compounds Other Than Fluorescence Spectrometers ??

Is There Any Feasible Method To Test The Efficiency Of Fluorescent Compounds Other Than UV Spectrometers ? Suggestions Would Be Appreciated !

02 March 2021 5,785 3 View

How to calculate average trend in maximum annual NDVI from MODIS?

I am wanting to calculate the average trend in maximum annual NDVI in Iceland from 2010-2020 using MODIS MYD13Q1 V6. How would I do this? I have currently inserted the NDVI bands from the MODIS...

02 March 2021 752 2 View

Kyle M. Stiers

Which properties? If you're looking for basic properties Expasy ProtParam is really good.

https://web.expasy.org/protparam/

Kévin Vervier

Is a resource like PubChem of any use? You can use the R package rpubchem(https://cran.r-project.org/web/packages/rpubchem/rpubchem.pdf) to download information from this database.

Walter Douglas Fairlie

The Protein Parameters tool (http://www.protparam.net) does everything that Expasy ProtParam does but also lets you input DNA sequences for translation and as well as directly enter OD280nm for online calculation of protein concentration. Much faster response time too....