I am performing protein-protein docking using Autodock tools (following https://www.researchgate.net/post/Problem_in_using_Cygwin_commands_for_running_Autodock). I have tried by adding Kollman charges to both proteins and gasteiger charges to one protein, but the problem appears while I run Autogrid, and showing the error shown in the attached screenshot. I am not able to interpret this error. Can anyone tell me where I went wrong in doing the protein-protein docking and how can I correct it?
The proteins I have used here are Apoptosis-inducing factor (AIF) and ATP synthase protein 6 (ATP6) from Dictyostelium discoideum.
Note: I have modeled both the protein structures via homology modeling.
Deleted research item The research item mentioned here has been deleted
Please refer to the following link:
https://www.researchgate.net/post/How_can_i_make_docking_of_two_proteins_using_Autodock
Hiteshree Buch
Read the last line of the error. There is something wrong with the path to your input file.
Abhijeet Singh I have already checked path of the input file, but its the exact location with no mistake.
Can you suggest anything apart from this?
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