I am performing protein-protein interaction using AutoDock 1.5.6, but in .dlg file, it throws an error "ERROR: 2328 records read in, but only dimensioned for 2048.
Change "MAX_RECORDS" in "constants.h".
Aborting...
Unsuccessful Completion."
I have searched for this error and got this "http://mgldev.scripps.edu/pipermail/autodock/2009-February/005150.html ". I have tried my best to follow the guidelines provided here, but as I have a windows 10 operating system (and the link shows the commands for Linux system) I couldn't find any command to perform the same.
Moreover, I also went through " http://autodock.scripps.edu/faqs-help/how-to/how-to-setup-adt-scripts" as earlier also someone has asked this kind of question but didn't really understand the idea behind this link as an answer.
Also, I have tried to change the value of MAX_RECORDS and MAX_ATOMS in constants.h but without compilation, it didn't work out and I got the same error again.
Please help me with some guidance for this query.
Thanks in advance!!
Hi Hiteshree,
What are you trying to do exactly?
Why can't you change the constant on C use VisualStudio and the open source code and compile it.
I dont like C nor do i like VisualStudio anyway i use Java and Python.
What is your requirement. Maybe you should use python and solve ur problem with your own algorithm.
In case you are working on Covid let me know. I posted the BioPython stuff. Well i checked the Charabia of that 309pages boooook that is talking about BioComputing.
What is a Protein?
I recommand you to make us some step by step problem usecase y put it as pdf attached. I like more if you do a video showing us ur problem i am too tired to understand the problem.
Maybe you should also explain us what is a Protein?
Hi Alexei,
You didn't really give us a help but rather talked out of the topic. Linux and Windows are not different they use both C. So write your own edit func or use that of IBM.
Even Python use C. C is the underlevel before Assembler.
Every file has a descriptor and all operating systems needs files.
In win10 they us C# C/C++ they have MSDOS build with C and maybe Pascal. Win2D use VisualBasic for Office Products like Excel and they use C# WPF for explorer..
For MacOS it is Unix and the only difference is big little endia they solved that when Intel got on MacOS and AMD went ???
The Visual Code Studio from Microsoft is very rapid in MacOS and very slow by Windows10.
Anyway, i have a virus both in my PC and in my WinBody3D.
Do you have any Health Help Suggestion for meYpc.
you simply install Linux operating system, that is best solution.
change your operating system platform
window is not good operating system. still in development stage.
Linux , UNIX is complete operating system with builtin security features.
Autodock 4.0.1 is running in Linux operating system very well.
Kais Kara I am trying to perform molecular docking of the BRCT domain of the adprt1 gene of Dictyostelium discoideum with its interacting proteins. The main problem here is the size of the interacting proteins, which are said to be ligands in my case. AutoDock 4.0.1 has a maximum limit of 2048 records for ligand, but the proteins interacting with the BRCT domain have more number of maximum records which throws an error I have mentioned in the description of the question.
I had simply change the values of MAX_RECORDS and MAX_ATOMS and again run the AutoDock but due to the same error, docking wasn't succeeded.
I just want to overcome this obstacle because rest everything works super fine.
I don't know how python script will help me in this!!
Aleksandar S. Sokolovski Adnan Majeed I was also thinking about the same, but a bit worried that on Linux will auto dock perform better than on windows!!
Also are there any other good software for docking interactions? I have checked a number of them but didn't get any program as good as auto dock.
Regards,
Hiteshree Buch
Aleksandar S. Sokolovski A couple of software you suggested (Docker and openshift) do they only work upon Linux?
If yes, then I have to first change my operating system into Linux and then will be able to use them.
Sure sir will let you know if required further.
Thanks and regards,
Hiteshree Buch
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