Subtractive genomics has been referred in bioinformatics papers.
I am interested to know how to do such work?
We have obtained some novel miRNA sequences of buffalo, following NGS of sRNA sequences (Ion Torrent platform). I have contacted the miRBase however, no communications received. Please let me know...
05 June 2015 9,053 9 View
We have got an extensive list of IsoMir (cow genome used as map-file) after analyzing miRNA-seq data by miRAnalyzer (data were custom analyzed by s sequencing agency). Now we have the list in the...
05 June 2015 4,728 2 View
We have sequenced miRNA of bubaline/buffalo leukocytes. Some novel miRNAs have been obtained. One example file has been attached. We are now blasting each of the novel miRNA sequence against the...
02 March 2015 5,983 5 View
02 March 2015 459 2 View
I am a novice in this field. Please help me identify the mistake in this code to use GetOptions. I am using Windows OS (Win8.1) #!/C:/Perl64/bin/perl require 5.16.3; # use strict; use...
05 June 2014 302 6 View
Suppose I have got a pair of sequences (100 amino acid each), one is conserved cds and another one is a non-conserved coding sequence. 1. Which one should be used for phylogeny? 2. Do these two...
05 June 2014 4,340 12 View
Look at any phylogenetic tree we will find the internal nodes. However, do we have the common ancestors which are occupying those internal nodes in the real world? Sometimes we come up with...
03 April 2014 8,534 6 View
It is well known that bioinformatics uses the knowledge of molecular biology, statistics, computer science and information technology (a part of computer science only). Can we say bioinformatics...
03 April 2014 7,059 7 View
Why can lymphocytes be cultures in vitro, but not the other type of blood cells, like leukocytes (viz. granulocytes and monocytes) and erythrocytes? Although certain reports are there regarding...
07 August 2013 2,679 0 View
How useful is this site? http://bioinformaticssoftwareandtools.co.in/
07 August 2013 7,489 33 View
I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...
05 August 2024 6,787 4 View
I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software? Best wishes, Waleed
30 July 2024 1,061 5 View
PeptiCloud (www.pepticloud.com) is a bioinformatic platform that allows researchers to organize and share their data for their projects as well as collaborate with others in one place. Through...
28 July 2024 4,762 2 View
Hi all. As a beginner in ChIP-seq experiments, I hope you understand that the following questions might be somewhat basic. I am planning to perform ChIP-seq or MeDIP-seq analysis to investigate...
28 July 2024 6,938 1 View
Probiotics related.
22 July 2024 1,707 2 View
Hi! I am currently working on a protein where I have selected residues within 10A of its bound ligand in pymol. However, I can not find a way to print out what residues are contained in that group...
15 July 2024 1,727 1 View
Silver Nanoparticles docking with alpha amylase and alpha glusidase .
11 July 2024 6,883 2 View
Hello, So I have mouse brain tissue MS data from one of my predecessors and I have human serum data from the hospital that I collaborate with. We are trying to find markers for the diagnosis of...
11 July 2024 8,484 0 View
How is pharmacogenomics transforming personalized medicine, and what are the current challenges in its implementation?
05 July 2024 5,082 2 View
is there any ways that i can find genome similarity of an organism without whole genome sequencing ,like using maths formulas or experimental progress ?
05 July 2024 4,070 3 View