Transcription factor binding site prediction tools?

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Michail Yekelchyk

Hi,

You can have a look on this site: http://meme-suite.org/tools/ame

Basically, you submit a FASTA sequence, and get a list (with p-values) of TFs, whose motifs are enriched in your input.

Best,

Michail

Nisha Kriplani

Thanks for your reply Michail but I was looking for more of a global analysis. I have a transcription factor that has a phenotype and I was looking for a list of possible targets through which the transcription factor is causing the phenotype.