Hi every one,

I am trying to search for genes related to a certain metaboilc pathway in bacteria.

I have the whole genome data, I annotated using prokka and used the faa file, I ran eggnog, so now I have ko, go and ec numbers for each protein, but I donot know where to go after that, I have big number of samples, and I want to check the genes in that certain pathway and try to cluster them all and compare.

thank you very much for your help