Mouse SNP query: duplication of strain data?

07 July 2016 1 4K Report

I am looking at SNPs between different strains of mice for a particular interval. When I try to use the MGI for SNP analysis http://www.informatics.jax.org/ I find strains that have multiple data like MRL/Mp and MRL/MpJ and AKR and AKR/J that should turn out to be the same on analysis but they don't. I am not sure how to tackle that problem. Anyone has suggestions on that?

Zaid Nsaif Al-Tameemi

Dear Abbas

I think, it is better when you use ensembl.org database. For me I see it is good for SNPs comparison.

Good Luck

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