I have been testing a NFkB luciferase reporter. I have always done it in HEK293 cells and the positive and negative controls are working fine. But as I changed to epithelial carcinoma cells, the luciferase is not being induced as it should be. As control for a working system, I measure as well the IL-8 cytokine production in the supernatant of the epithelial cells and I see that it is induced as my controls have always done, but the luciferase is almost none (Epitheal cells: RFU 600; HEK293 RFU 22000). A similar effect I saw with AP-1 luc (another transcription factor for IL-8 production) in the epithelial cells.
Could it be that HEK293 keep the transfected DNA somewhere else as the epithelial cell line? Has anyone had the same experience with other cells and luciferase reporters?