Is there any database for matched microRNA and mRNA expression data using the NGS technique?

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

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Is it possible for two human neuronal cell lines to have different gene sequence for the same protein?

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Genome-wide gene identification protocol ?

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28 February 2021 8,095 1 View

MiRNA qpcr problem?

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Any specific pipeline or parameter to analyse total transcriptomics study of brain tissue samples?

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Why is the efficiency of viral mRNA electroporation in PBMC low?

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Runs of nucleotides in Sanger sequencing?

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Has anyone used the Illumina ITS1 primer sets?

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How do you mesh a thin solid in Fluent?

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Can MicroRNA cross the blood brain barrier?

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Antonio Colaprico

Hi Thuc,

I agree with Luciano you can use TCGA's data. In particular you can try the function TCGAquery_integrate to have the idea of the common (matched) samples among platforms for a selected tumor, and then download and prepare the data. In addition it should be nice to use TCGAbiolinks with your recent miRLAB Bioconductor package.

For further informations or collaborations you can write me ([email protected]).

Best,

Article TCGAbiolinks: An R/Bioconductor package for integrative anal...