Is there any database for matched microRNA and mRNA expression data using the NGS technique?

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Luciano Cascione

Hi,

Take a look at the TCGA data portal: https://tcga-data.nci.nih.gov/tcga/

Best,

Luciano

Antonio Colaprico

Hi Thuc,

I agree with Luciano you can use TCGA's data. In particular you can try the function TCGAquery_integrate to have the idea of the common (matched) samples among platforms for a selected tumor, and then download and prepare the data. In addition it should be nice to use TCGAbiolinks with your recent miRLAB Bioconductor package.

For further informations or collaborations you can write me ([email protected]).

Article TCGAbiolinks: An R/Bioconductor package for integrative anal...