I reculture each colony in another plate after transformation and use them for cracking in the cracking buffer (SDS,NaOH,EDTA,D2O), I run them with 10 micro dye hardly but I don't see plasmid bands for comparing.
EDTA is known to cause smearing in agarose gel electrophoresis. Try not adding EDTA in the cracking buffer. SDS, NaOH are enough for cracking. It won't affect your experiment.