How to see Interaction using Ligplot after using Hdock server?

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Nor Farrah Wahidah Ridzwan

Hi Haslina Asis ,

First of all, did you use LigPlot or LigPlot+?

I believe only LigPlot+ has the program to plot interactions between protein-protein or domain-domain interfaces.

Secondly, on LigPlot+, did you make sure to use/select the DIMPLOT program?

Here is the link for the manual for your reference:

https://www.ebi.ac.uk/thornton-srv/software/LigPlus/manual2/manual.html

Hope this help. All the best.

Haslina Asis

Hi Nor Farrah Wahidah Ridzwan , thank you for your response! Im using Ligplot+ , however when I added the pdb file from Hdock, it says no protein-protein interaction.