Hello,
I have sequenced an organism by using NGS technology. After assembly, I found it only has 6-22% homology with other related GenBank enteries. I performed MSA with all of related-organism genomes, but it is time-consuming and its phylogenetic tree is hard to interprate. I want to know what is the exact process to do. The organism is a phage, and its family has identified by electron-microscopy.
Regards