How to extract or unzip HT_HG-U133A files for further anlysis of gene expression data?

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How to convert a .fasta file to fastq file ?

I have a FASTA file, how can i convert it to a FASTQ file via command line or by any online converter. The existing online converter is giving error and is unable to parse my fasta file.

11 December 2018 9,878 15 View

How to construct a 5-node PPI-TF-mirna-gene regulatory network?

I have some genes known to be involved in Oral Submucous Fibrosis (OSF) progression and also their PPI network along with gene-gene interaction. I want to construct a 5-node Feed forward loop with...

09 October 2018 1,786 0 View

How to map Illumina probe set ID to Gene ID?

Is there any computational tool/software/program code to convert/map illumina probe set IDs to gene IDs for a large data file...

09 October 2017 9,777 1 View

What is the best approach for detecting functional modules in gene expression data ?

What are some of the best approaches to find out functional modules in gene expression data .

04 May 2017 7,960 4 View

How DNA Circuits be used to stop cancer progrssion?

Can DNA Circuits be used to make nano auto triggered bombs to stop cancerous cells from growing when they come in contact with them.

08 September 2016 2,549 1 View

How to represent cancer in differential equation model ?

06 July 2016 4,655 2 View

How can Q3 accuracy of secondary structure of proteins be calculated ?

How is the Q3 accuracy or three state accuracy of secondary structure of proteins calculated. In some texts it is written that it the no. of correctly predicted secondary conformation of amino...

02 March 2016 1,055 5 View

Is Python better than Perl ?

08 September 2015 8,725 2 View

Does drinking excess coffee prevent sleep paralysis ?

08 September 2015 5,771 4 View

How much voltage is generated in brain when synapse occurs ? Is it sufficient to light up a bulb ?

How does electrons flow from one synaptical area to another during synapse ?

08 September 2015 3,750 1 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View

Resistor definition in Piezoelectric bimorph with ANSYS workbench

Hello, good day! I am trying to simulate similar bimorph piezoelectric harvester with below commands. However, the output power doesn't change with resistor value. Please help to find the reason. ET,10,CIRCU94,0 !SET UP RESISTOR R,1,100000 !RESISTANCE VALUE TYPE,10 !SET ELEMENT TYPE E,1,2 !CREATE RESISTOR BETWEEN NODES 1 AND 2 Thanks in advance Regards,

02 March 2021 0 0 View

Arena simulation - how do i model the following model in ARENA (see description) (new to ARENA)?

Hello, I'm fairly new to ARENA and I have the following problem: I have two queues in which, in each queue, a different order type arrives (both having an arrival rate of exponential 10). Order...

02 March 2021 2,431 3 View

What are the most reliable approaches to extract key continuous frames from a video, with complete automation?

I have an input video, of skin (from a microscope that means it is magnified such that blood capillaries are visible). The idea is to extract 15 sec of continuous frames from a video of 1 min,...

02 March 2021 2,735 2 View

How to repeat an operation on an atom selection for multiple times in PyMol?

Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...

02 March 2021 4,569 4 View

How can extract ciprofloxacin hydrochloride disolve in water er to organic solvent such as dichloromethan or any other solvent?

I need a procedure to extract the ciprofloxacin hydrochloride from aqueous solution by using dichloromethane in detail,. I thank you very much.

01 March 2021 4,306 1 View

Which bacteria are suitable for quorum sensing screening?

I want to find a quorum sensing inhibitor from plant extracts. Klebsiella pneumoniae, Moraxella catarrhalis, Staphylococcus aureus, and Streptococcus pneumoniae. I looked for these strains...

01 March 2021 7,675 3 View

Vipul Choudhary

Since you have downloaded raw data from the author's work, It must be in Raw format or you could say .SRA format, to convert this to any other format so that machine or R programme can use it, Convert your file from .SRA to fastq or .fa format, which is a standard format to work on Raw data. You can use SRA toolkit to convert the file. Note: The toolkit only works with linux and it requires higher CPU to process it, if you have any server , upload the file onto it and use the toolkit on it. Time may vary, depending on your data. If you have 2.5 GB file , it may take 5 to hours with high power CPU.