How to do clustering of proteins on the basis of BLASTall result for all the proteins in any genome?

22 October 2012 1 7K Report

I have done blastall for my all proteins with each other. Now I am stuck in clustering for these all proteins. How to go on in this regard?

Gabriel Rech

You can use MCL (Markov Cluster Algorithm) . You can read "Clustering similarity graphs encoded in BLAST results" in the protocols section. (http://micans.org/mcl/)

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