How to calculate nucleotide diversity (Pi) using command line?

02 April 2020 0 684 Report

Hi, everyone!

I would like to calculate nucleotide diversity using a command line approach. I've tried PopGenome but it seems that I must indicate populations and that's not my case. My inputs are fasta files and I want to do something like DnaSP does, but I have more than 30,000 files. So, I seek to obtain an average Pi to each alignment. Could anyone please help me?

Thanks anyway!

Best wishes,

Mariane.

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