Hi, I am working with HEK293 cells and I am trying to express a Cas9 fusion (about 220 kDa) under the control of the EF-1α core promoter. The issue I am facing is that the expression of Cas9 fusion is high enough in transient transfection but too low when I make stable cell lines by linearizing the plasmid and doing antibiotic selection. I don't observe problems that the cells would be dying nor do I have problems to reach 100% positivity of my clones. The only problem is that for whatever reason the expression is too low.
I was thinking of making inducible system (here I would keep the EF-1 promotor and just add the tet operator - if that's a way to go?) or by cloning my plasmid to a specific region of the genome (but I'm unsure where to clone it).
Would anyone have any suggestions?