How one can get the miRNA sequences and its 3'UTR target sequence ? For my research i need only the sequences for validated target sites. Any Help?

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Sansrity Sinha

You can look at miRBase and miRDB. miRdb will give all the miRNAs binding to your 3ÜTR sequence. psRNATarget Scan is another tool that will give you a list of miRNAs binding to your sequence along with its binding energy and other details. if you exlore you will get to know from the list how to determine if those miRNAs are experimentally validated or not.

Malik Yousef

Sansrity

Thanks for your reply. I need a whole dataset or part of it in text format that for example i see the miRNA mature sequence and its 3'UTR sequence.