How do I find shine dalgarno sequences for prokaryotes?

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Georgios Georgakilas Popular answer

i have developed a Perl script that given a DNA sequence, it reports all the SD motifs as well as their relative position on the sequence. If you are interested email me and i could reply with a download link.

EDIT 3.8.2017:

Oh my... I haven't checked this thread for a while!

I apologize to everyone that asked me for the script and i didn't send it to their mailbox.

Whoever is still interested, please send me a researchgate inbox message and i will reply as soon as possible.

I apologize again for not checking the thread more frequently.

Robert Sidney Cox III

Note that SD sequences are not required for translation. But, the always occur near the first codon. This model is pretty good at predicting translation strength: http://www.sciencedirect.com/science/article/pii/S0378111904007048

Georgios Georgakilas

Akram Abolbaghaei

Hi Georgios,

I would really appreciate it if you could email me the Perl script that you have developed .I'm actually doing the samething for part of my project.

Here is my email,

[email protected]

Margaret Menzin

I'd love a copy too. I am Margaret Menzin w/ email [email protected]

Yusuf talha Tamer

I'd love a copy too please. I am Yusuf T Tamer and my email is [email protected]

Ana Ruiz-Saenz

Could I also have that link for that Perl script, please? I'm Ana Ruiz and my email is [email protected]. Thank you.

Valeria Parreira

Hi Georgios, would you mind send your Perl script to me as well please? My email is [email protected] . Thank you very much.

Ursula Kaspar

Dear Georgios,

I just saw this thread as I was also searching for some program prediciting the position of the Shine-Dalgarno sequence.

I would very much appreciate, if you could send me the link to your program as well.

My email is [email protected]

Thanks a lot!

Rosa María Gutiérrez-Ríos

Ilya V Kublanov

and to me also :)

kublanov.ilya_at_gmail.com

thanks a lot!

Sonia Verma

could you please send that script to me.

I would be very thankful to you.

Nina Schleimer

for me also please :D

Thanks a lot

Guadalupe Valencia

Could you please send a script, please.

Thank you.

I have asked you for this script some time ago....for some reason I did not receive. Would you mind to send me again?

Thank you

Valeria

Nguyen Phuc Thien

I like your software, please give to me. my email [email protected]

Elvis Ndah

please can you also send a copy of your script to me. [email protected]

Muhammad Maqsud Hossain

Hi Georgios

I am also trying to find the SD motif from 20bp upstream of a bacterial. It would be highly appreciated if you can kindly send me the perl script.

Thanks

Ram Saini

plz send me the same at [email protected]

Manti kumar Saha

Hi . I m looking for SD sequence in bacterial genome..

Can you please send me copy of Pearl Script too?

My email id:[email protected]

Isabelle Lengers

Hey Georgios,

I am very interessted in your Pearl Script because I'm looking for such a SD sequence as well.

Can you please send me a copy too?

thanks a lot and have a nice day.

Isabelle

Jun Jie Wong

Hello Georgios,

I am very interested in your Pearl Script. Can you send me a copy?

Thank you and have a nice day!

Alireza Ebadi Tabrizi

Dear Georgios;

Thanks for your GENEROSITY. Would you please send it via the following email address. Please accept my appreciations in advance.

Regards,

Alireza

Owen Woycenko

I would very much appreciate if you could email me a copy of this Perl script.

My email is: [email protected]

- Owen

Naveed Anjum

I would be very thankful to you if you you could email ([email protected]) that Perl script.

Said Nawab

Dear All,

Can anyone inbox me the Pearl Script. My email ([email protected])

Said - Did you get the script? Dr. Georgakalis kindly sent it to me 5 years ago. If you email me directly at [email protected] I can send it to you.

Imène Kouidmi

Hi Georgios Georgakilas,

could you send me the link, please.

Alika Andjani Widada

Hi Georgios Geograkilas,

Could you send me the link. please.

Minh-Nhat Truong-Ha

Dear Mr Georgios Geograkilas,

If you are still active, could you please send me the script to detect SD sequence, since I am doing a research that need to detect such sequence. My e-mail is: [email protected]

Thank you,

Minh Nhat.