Have anyone worked on Transposeq tool?

I am working on Transposeq tool. Any help is much appreciated. http://www.broadinstitute.org/cancer/cga/transposeq

01 February 2015 261 1 View

Phylogenetic analysis of the gain/loss of genes along different species lineages?

To identify the gain/loss of genes in a set of species? For example, I am interested in identifying the list of tRNA genes which are gained or lost among different strains of bacterial species or...

05 June 2013 5,629 4 View

I am interested in collecting the physiological pH values for Prokaryotes (e.g. bacteria).

For example, some bacteria that thrive in extreme salt water environment will have different pH from other bacterial species in other environments. Is there any database available with these values?

01 February 2013 3,343 0 View

How to find early and late proteins in any species?

Do early proteins represent highly expressed proteins and late proteins represent lowly expressed proteins? Am I correct? Is there any reliable source? On what basis the proteins are decided that...

31 December 2012 4,125 1 View

How to carry out chi square test for this data

I am trying to find, is there is any statistical difference between these two sample groups of data. For example, GCC(A) codon is highly over used in group1 compared to group2. How to get p...

10 November 2012 4,535 6 View

How to find the over used codon from each codon family (2-fold,3-fold and 4-fold) for 10 different strains? I use SAS tool.

10 November 2012 6,333 0 View

What software can I use to do statistical analysis for correspondence analysis?

Correspondence analysis (Multi variate analysis) Currently I am planning to learn correspondence analysis (CA) for my research work. Can anybody teach me how to perform CA and mainly how to...

07 August 2012 1,134 12 View

Temperature data for all bacteria?

Is there any database or research team working on developing a database of all temperature-related data for all types of bacteria?

07 August 2012 6,259 18 View

I want to learn correspondence analysis and multivariate analysis?

If the above concept is explained in biological example, it will be more helpful for me.

05 June 2012 1,270 3 View

Is there any database to get the highly expressed and poorly expressed genes?

For any species?

05 June 2012 9,604 4 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

How to repeat an operation on an atom selection for multiple times in PyMol?

Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...

02 March 2021 4,569 4 View

How to calculate average trend in maximum annual NDVI from MODIS?

I am wanting to calculate the average trend in maximum annual NDVI in Iceland from 2010-2020 using MODIS MYD13Q1 V6. How would I do this? I have currently inserted the NDVI bands from the MODIS...

02 March 2021 752 2 View

Which is suitable for use with Python? MySQL or SQL Server?

Which is suitable for use with Python? MySQL or SQL Server? What is your suggestion?

01 March 2021 3,422 3 View

Which cell line should we use to perform biological dosimetry experiments?

We are preparing some experiments based on irradiating cells under different conditions in order to evaluate the effects in terms of DNA damage, genetic expression, etc. As our project is...

01 March 2021 3,355 3 View

Why does two different bioinformatics tools for the same proteins show different subcellular localizations?

During a computational analysis, I found that for a protein of a plant, two different subcellular localizations are seen using CELLO and WoLF PSORT. For example, in CELLO, it identified the...

01 March 2021 6,729 2 View

Isolates of Hymenoscyphus fraxineus?

Dear Dr. Cai, my name is Simone Prospero and I work in the team of Phytopathology at the Swiss Federal Institute for Forest Snow and Landscape Research (WSL;...

01 March 2021 1,133 1 View

What is the most suitable server for predicting protein structures in bacteria?

I have used the i-Tasser several times, however it has been unavailable for several days. I tried the swiss-model, but the output was not very pleasant due to the model used. Is there any other...

28 February 2021 4,521 3 View

What is the difference between genotype and haplotype data in the ped format?

Hi everybody In the ped format for genotype, alleles of any SNP are represented by two columns (one for each allele, separated by a space). Is a column sufficient for the haplotype to...

27 February 2021 1,965 1 View

I have need of XRD graph analysis software for phase identification. Can you please provide links for software tools which can be downloaded?

i am trying to download x'pert high score software, but can't download it. please do suggest software for phase analysis

24 February 2021 5,687 4 View