Have anyone worked on Transposeq tool?

I am working on Transposeq tool. Any help is much appreciated. http://www.broadinstitute.org/cancer/cga/transposeq

01 February 2015 261 1 View

How do I find shine dalgarno sequences for prokaryotes?

Is there any tool to identify it or Is there any database with relevant information on it?

02 March 2013 3,099 30 View

I am interested in collecting the physiological pH values for Prokaryotes (e.g. bacteria).

For example, some bacteria that thrive in extreme salt water environment will have different pH from other bacterial species in other environments. Is there any database available with these values?

01 February 2013 3,343 0 View

How to find early and late proteins in any species?

Do early proteins represent highly expressed proteins and late proteins represent lowly expressed proteins? Am I correct? Is there any reliable source? On what basis the proteins are decided that...

31 December 2012 4,125 1 View

How to carry out chi square test for this data

I am trying to find, is there is any statistical difference between these two sample groups of data. For example, GCC(A) codon is highly over used in group1 compared to group2. How to get p...

10 November 2012 4,535 6 View

How to find the over used codon from each codon family (2-fold,3-fold and 4-fold) for 10 different strains? I use SAS tool.

10 November 2012 6,333 0 View

What software can I use to do statistical analysis for correspondence analysis?

Correspondence analysis (Multi variate analysis) Currently I am planning to learn correspondence analysis (CA) for my research work. Can anybody teach me how to perform CA and mainly how to...

07 August 2012 1,134 12 View

Temperature data for all bacteria?

Is there any database or research team working on developing a database of all temperature-related data for all types of bacteria?

07 August 2012 6,259 18 View

I want to learn correspondence analysis and multivariate analysis?

If the above concept is explained in biological example, it will be more helpful for me.

05 June 2012 1,270 3 View

Is there any database to get the highly expressed and poorly expressed genes?

For any species?

05 June 2012 9,604 4 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View