I'm trying to mutate a LEU residue in a peptide, using Modeller, but the final PDB is the same that the starting one.
Hi Ramon
In order to replace residues in protein I use pymol. It is very easy to do. follow the link:
http://www.pymolwiki.org/index.php/Mutagenesis
https://salilab.org/modeller/manual/node250.html
Why use modeller? You can do it easily in chimera with the structure editing/rotamers tool
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