I have a set of data from three groups across 3 time points (2 groups are subjected to an intervention and the third acts as control). I want to evaluate intra and inter-group differences between these time points for a given variable. However, at baseline evaluation, one group data is significantly lower compared to the others. I thought maybe I could analyze data from a percentage standpoint, say first assessment is 0% and afterwards intragroup difference is 15% or whatever. I believe this is possible for intragroup analysis but I´m not sure if it is possible for inter-group analysis.

On the other hand, I could just analyze raw data instead of transforming it but this may lead to some issues that I´ll probably have to adress in the discussion.

Any idea on what can I do?

Thanks in advance!

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