I have protein that has DNA binding activity. I want to know how I can predict which part of my protein is interacting with DNA by in silico method.
If you have full sequence of amino acid of your protein or gene sequence of your protein then you can predict DNA binding site or DNA binding domain. It is depended on source of protein. If structure of protein (pdb) is knownthen your task begun easy. There are many website avail this facility and few of these is mentioned below. Ultimately it depend on purpose of predicting structure. You have to find out most suitable algorithm which is fit for your purpose.
Regards,
Thank you
http://floresta.eead.csic.es/3dfootprint/
http://idbps.tau.ac.il/
If you have full sequence of amino acid of your protein or gene sequence of your protein then you can predict DNA binding site or DNA binding domain. It is depended on source of protein. If structure of protein (pdb) is knownthen your task begun easy. There are many website avail this facility and few of these is mentioned below. Ultimately it depend on purpose of predicting structure. You have to find out most suitable algorithm which is fit for your purpose.
Regards,
Thank you
http://floresta.eead.csic.es/3dfootprint/
http://idbps.tau.ac.il/
- Badges
- Science topic
- Similar topics
- Computer Science and Engineering
- Bioinformatics
- Bioinformatic Tools