Looking for a way to import LogFc values from an RNAseq database to Cytoscape or String.app to create a string map. We would like to costumize the size and colours of the nodes for every pathway according to the extent of their over- or underexpression. Is there any way to import LogFc data (+ and -) and make the software to costumise the nodes accordingly?
Thanks in advance for any advice!
Dear David,
First prepare an MS excel file including the edges of you network (below) and import the table (use file option-->import network):
--first column as "source name" and
--second column as "target name".
Then, prepare node table and import (file---import table):
first column: unique names
second column: fold change values
Then use the style section to define the size and color , ...
Check the links below for more detail:
http://manual.cytoscape.org/en/stable/Node_and_Edge_Column_Data.html
http://manual.cytoscape.org/en/stable/Styles.html
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