I was wondering if I was thinking about this right:

My DNA-Protein Complex would break if I used the phenol-chloroform extraction which would completely mess up my experiment. So, my other option would be ethanol. The DNA-Protein complex would be safe and not break or denature. I need both to come together as a complex, not individually. My resources are limited, so my only other option would be NaCl. 

Is this right, or am I mistaken in my thought process. This is my first time working with (or against, depending on the way you look at it) DNA-Protein complexes. 

I hope you all have a great weekend!

Many Thanks,

Micah l