Hello,
I'm looking for genes related to antifungal activity in my bacterial genomes. So I'd like to do a specific search for these genes and avoid double efforts instead of annotated all the genes with an unspecific database.
Thanks
Uh have to search for separte genes like iturin, surfactin, fengycin, etc they are mostly found in Bacillus sp.
I think you are looking for genes involved in secondary metabolism. antiSmatch may do the job. It allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes.
https://antismash.secondarymetabolites.org/#!/about
Best
Thank you for your help Loubna Youssar! I actually found some tools for mining secondary metabolites as you said, here: https://www.secondarymetabolites.org/mining/ including antiSmatch.
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