Our lab is in the process of setting up in vivo optogenetics in RATS for behavioral studies. The goal is to activate specific projections based on their connectivity, so we are considering the method of injecting the opsin into region A and a WGA-CRE virus into region B, so that when we stimulate A, only those cells projecting to B get activated.
Is this method reliable enough to get good expression of the opsin? Are there issues with spillover? We are planning on using AAV5 for the opsin to get a large region of transfection. Is AAV5 the best serotype to use for WGA-CRE as well, or would something like AAV9 work better?
How does this method compare with using CRE packaged in a retrograde virus (e.g., CAV, PRV)?