I am looking for data from mammals ideally, but I will take anything to be honest. I am getting to grips with bioinformatics and need a practice data set with which I can go through the steps of filtering and trimming and mapping to a reference genome etc..
If anyone also has any advice on tools used subsequently for analysis such as MethylKit that would be awesome.
Thank you
I suggest you to check out TCGA database , specially if you liked to work on cancer genomics .
You can use this link as a starting point: https://www.ebi.ac.uk/arrayexpress/search.html?query=methylation
Also, MethylKit provides a function dataSim that simulates DNA methylation data from multiple samples.
Dear Katharyn following link might be useful for you, just try it.... as it has all the downloadable contents including the fastq files you may need in methylation work...
https://zenodo.org/record/557099
Regards....
The majority of bioinformatics tools offer sample data. Instead, you may use the data. For instance, test data may be found at https://github.com/FelixKrueger/Bismark.
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