I have used the pulsenet method for plug preparation for HMW DNA from various bacterial species. These methods have been standardized to be used for the identification of bacterial PFGE profiles.
The protocol you use will most likely depend on the cells type you are analyzing.
I have found these methods to be reliable and reproducible. I hope this helps!
Chris
These protocols suggest using SeaKem Gold Agarose: SeaKem® Gold Agarose, 125 g | Lonza