I am selecting RNA aptamers against a viral protein. To increase its nuclease resistance we use 2' fluoro modified RNA. I am wondering if the 2' fluoro modification has any affect in the structure of RNA and if yes then how.
I am trying to characterize the secondary structure of my aptamer . I don't see neat and clear digested bands in my samples. I am attaching all the gels I have run until now, this is my first...
05 June 2014 3,884 1 View
I am trying to induce angiogenesis in Adult Bovine aortic endothelial cells using Matrigel at a concentration of 37.5ug/ml. I wanted to confirm if the cells are actually showing lumen formation. I...
11 December 2013 5,503 8 View
AcrD pump in BL21 cells
05 June 2013 1,188 0 View
I am trying to separate RNA binding sequences to virus particles from non-binders through sucrose centrifugation. I am layering the RNA virus particle mix onto 20% sucrose and taking the pellet...
01 February 2013 8,202 7 View
I am working with bovine aortic endothelial cells and after thawing I split them at 1:3 ratio. The cells didn't grow, so I came across an article saying that BAEC's divide in the presence of fgf....
09 October 2012 1,787 13 View
I have hit a roadblock in my qPCR reactions. I am trying to quantify the mRNA levels of PAI-1 gene in BAECs . I see jagged amplification peaks in my qPCR. I thought might be my cDNA is not good...
05 June 2012 8,150 9 View
I am working with Bovine Aortic endothelial cells and in those cells we want to check the effect of growth factors on a particular gene at the mRNA levels. There are human primary cells available...
05 June 2012 5,901 95 View
My end goal of the experiment is to do a qPCR of the RNA samples. I isolated RNA but didnt get very good yields and also the 230 peak was very high. Still, I went ahead with reverse transcription...
04 May 2012 2,507 6 View
Hello Everyone, I am working with fetal bovine aortic endothelial cells and I treat them with specific growth factors eventually. Usually they are very elongated and have protusions when dividing...
04 May 2012 9,788 3 View
Gel electrophoresis, RNA degradation, RNA extraction from fresh tissue
02 March 2021 5,433 5 View
It is oftentimes said to be a distinctive metallographic trait that differentiates a fully austenitic and a fully felly ferritic steel without etching that might distinguish between two. Why...
02 March 2021 728 2 View
I have used the i-Tasser several times, however it has been unavailable for several days. I tried the swiss-model, but the output was not very pleasant due to the model used. Is there any other...
28 February 2021 4,521 3 View
I transfected my LNCaP-WT cells with 3 shRNA plus their NTC two weeks ago and split two puromycin selected cell plates on Friday last week(Feb 26). I checked for GFP in the cells, and they all...
28 February 2021 4,949 3 View
I have two groups of brain samples, control and treated for example. It was total RNA nova seq sequencing. I tried all the available pipeline like: star+rsem+deseq2, Hista+stringtie+cuffdiff,...
27 February 2021 356 6 View
Hello, I have been struggling with the electroporation of PBMC with HIV-I mRNA. Although the quality of the RNA generated is good, and the handling of the cells in meticulous, the frequency of...
27 February 2021 9,233 3 View
I have synthesised cDNA from 500ng/ul of RNA. The concentration of the cDNA Is about 5000ng/ul. Should I dilute my cDNA or just use it as it is for my qPCR? I usually use 2ul of cDNA for a 20ul...
24 February 2021 8,618 3 View
I will be performing RNA isolation with frozen lung biopsy samples and am in the market for a tissue homogenizer. I am wanting a homogenizer that will fit in a 1.5ml tube. I was looking at the...
24 February 2021 3,623 3 View
I used EdgeR to get the list of DEGs (differentially expressed genes) from my liver RNA-seq experiment. I have done the gene overrepresentation and GSEA based pathway analysis. I am currently...
23 February 2021 8,969 1 View
To do liquid biopsy and look for specific gene expressions there are so many published papers. Thera are different protocols and procedures used to isolate circulating cell free RNA or mRNA from...
23 February 2021 7,326 5 View