How to construct convolutional neural network for image classification in keras?

I was trying many tutorials for cnn that I've found online but they are not showing good performance. But my dataset is good enough, when I try with knn or mlp in sklearn I'm getting above 98%...

01 February 2018 2,880 5 View

What is the state of the art in protein-protein interaction prediction?

I was studying about ppi prediction with machine learning approach, then the latest development I've found reported 97% accuracy with DVM hereAccurate prediction of protein-protein interactions by...

11 December 2017 6,571 7 View

How feature data are presented for training/test set for protein-protein interaction prediction studies?

I was reading some papers about protein-protein interaction prediction using machine learning. I understood that using various algorithms, all the sequences are transformed into equal length...

09 October 2017 6,742 3 View

Is there any tool for determining functional groups in a given compound?

04 May 2017 9,741 5 View

How to create a protein model with snp?

My protein of interest has 3D structure available in pdb. I know about an snp that produces short isoform of that protein. How or using what tool I can produce that isoform as a pdb file?

03 April 2017 2,138 3 View

How to identify Salmonella species with biochemical test?

Is it possible to presume about which Salomonella species present in the sample without using molecular tools like PCR? Just from biochemical tests? If I plan to do PCR for confirming species, how...

09 October 2016 2,063 2 View

How to use a list of deferentially expressed proteins?

06 July 2016 4,227 2 View

Can I use amazon web service for cpu intensive workload?

For one of my experiment I need to run a program continuously for a few days. I actually do this in a local cluster. There the head node connects with the slaves with ssh and distribute the work....

04 May 2016 5,647 2 View

How to save both receptor and ligand in same file?

01 February 2015 4,851 6 View

What analysis can I perform with miRNAs?

I have dataset containing thousands of miRNAs associated with a disease collected from miRTarBase. I need some idea, about what information I can deduce/predict with in-silico/bioinformatic...

01 February 2015 8,648 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

Does anyone know HRM channel in a 2 plex QIAGEN Rotor- Gene Q qPCR can be used as a separate channel?

I am going to have 3 different probes in my qPCR work that I am going to do. But I realized that the machine we have in the lab is a Rotor-Gene Q 2plex HRM Platform, saying it has green, yellow,...

01 March 2021 8,544 1 View

Could you please recommend some good journal that accept very long revie papers (approximately 6000+ words) in neurosurgery, cancer biology ?

Could you please recommend some good journal that accept very long revie papers (approximately 6000+ words) in neurosurgery, cancer biology ?

01 March 2021 8,087 3 View

Which cell line should we use to perform biological dosimetry experiments?

We are preparing some experiments based on irradiating cells under different conditions in order to evaluate the effects in terms of DNA damage, genetic expression, etc. As our project is...

01 March 2021 3,355 3 View

Is it possible for two human neuronal cell lines to have different gene sequence for the same protein?

I am looking at the ATP1A2 (Sodium/Potassium ATPase alpha subunit 2) in two human neuronal cell lines. Expression levels of this protein seems to be almost equal when detected by one antibody....

01 March 2021 3,607 3 View

Runs of nucleotides in Sanger sequencing?

I performed site directed mutagenesis, transformation, and then I sent out plasmids for Sanger sequencing and found out that there is extension of DNA just before the stop codon. I am not sure...

27 February 2021 547 3 View

What is the value of Conference Review Paper?

How much value does a review paper carry in a higher study aspirant student's profile which is presented in a Peer Reviewed Scopus Indexed conference?

27 February 2021 2,068 3 View

How to compare 2 samples recruited with different sampling methods?

If I want to compare characteristics of 2 groups of patients, one group is recruited from a random sample of the general public while another group is from a sample with a fixed gender (male to...

26 February 2021 3,526 3 View

Calculating volume of DNA required from DNA concentration?

Hi I am a bit confused. They are asking me to find out the volume of DNA required in ul (a total of 30-100 ng for genomic DNA) from the DNA concentration in the nanodrop reading which was 404.8...

26 February 2021 5,029 2 View

Centrality measures computation in Biblioshiny/ Vosviewer?

26 February 2021 7,279 2 View