22 Questions 27 Answers 0 Followers
Questions related from Ruhshan Ahmed Abir
I was trying many tutorials for cnn that I've found online but they are not showing good performance. But my dataset is good enough, when I try with knn or mlp in sklearn I'm getting above 98%...
02 February 2018 2,963 5 View
I was studying about ppi prediction with machine learning approach, then the latest development I've found reported 97% accuracy with DVM hereAccurate prediction of protein-protein interactions by...
12 December 2017 6,650 7 View
I was reading some papers about protein-protein interaction prediction using machine learning. I understood that using various algorithms, all the sequences are transformed into equal length...
10 October 2017 6,826 3 View
I'm looking for a tool that can give how many methyl groups, hydroxyl groups etc. are in a compound from it's SMILES, SDF or MOL2 format.
05 May 2017 9,856 5 View
My protein of interest has 3D structure available in pdb. I know about an snp that produces short isoform of that protein. How or using what tool I can produce that isoform as a pdb file?
04 April 2017 2,223 3 View
Is it possible to presume about which Salomonella species present in the sample without using molecular tools like PCR? Just from biochemical tests? If I plan to do PCR for confirming species, how...
10 October 2016 2,141 2 View
I have a list of proteins with their expression metrics. What tools can I use for predicting pathway, cluster analysis etc?
07 July 2016 4,307 2 View
For one of my experiment I need to run a program continuously for a few days. I actually do this in a local cluster. There the head node connects with the slaves with ssh and distribute the work....
05 May 2016 5,724 2 View
I have dataset containing thousands of miRNAs associated with a disease collected from miRTarBase. I need some idea, about what information I can deduce/predict with in-silico/bioinformatic...
02 February 2015 8,724 3 View
I've a receptor and ligand both as pdb file. With mgltools I've converted them to pdbqt. Then performed docking with autodock vina. Now I want my receptor and pdbqt generated by vina to have in a...
02 February 2015 4,934 6 View
Looking for research idea combining bioinformatics and machine learning. Help please
01 January 2015 3,041 3 View
I have a perl script which takes a fasta file as input. So from command line to run this I have to execute this: "perl scripl.pl some_seq.fasta some_directory". But, I have to do this for hundreds...
01 January 2015 6,789 6 View
I was thinking about applying in some undergraduate summer research programs focused on bioinformatics/computational-biology related field. Google revealed many US institutes but only expects US...
01 January 2015 775 1 View
I'm looking for list of bioinformatics tools which are only usable from command-line. No GUI for them is available.
12 December 2014 1,759 6 View
Anyone experienced with protein verification tool whatcheck[http://swift.cmbi.ru.nl/gv/whatcheck/]? Their homepage instructions seems blurry to me, looking for tutorials about installation and usage.
09 September 2014 1,837 0 View
Looking for in depth reviews for existing all DNA sequencing methods.
08 August 2014 9,370 3 View
I'm preparing a presentation on 'Python and Bioinformatics' and I'm open for any resources that you think might be useful.
06 June 2014 3,680 3 View
I want to count the number of possible linear peptides of different lengths of a given mass. I have tried a branch and bound approach which works for small numbers but it unexpectedly stops when...
04 April 2014 8,370 4 View
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04 April 2014 7,468 0 View
As far I know, in cloning just the nucleus from an animal is collected. In the egg of the mother, the remaining mitochondria is from a totally different individual. Mitochondrial genes are also...
04 April 2014 5,804 4 View
Can you please state the name and APC.
04 April 2014 284 9 View
Its about non-mendelian genetics.
04 April 2014 3,304 3 View
