How to use a list of deferentially expressed proteins?

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Biswaranjan Pradhan Popular answer

You can use following free softwares (Web based)

1. InnateDB (http://www.innatedb.com/redirect.do?go=batchPw)

2. Enrichr (http://amp.pharm.mssm.edu/Enrichr/)\

3. WebGestalt (http://bioinfo.vanderbilt.edu/webgestalt/)

The commercial softwares used for this analysis are

1. GeneSpring (Agilent technologies)

2. Ingenuity (Qiagen)

Biswaranjan Pradhan