Can you suggest best format for representing modifications in proteins?

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Ruan O'Tiarnaigh

We have developed a nomenclature which addresses this issue. Please message me directly at [email protected]

Gajendra Pal Singh Raghava

Ruan O'Tiarnaigh Please send me detail

Omid Moradi

there are several ways to analyze your protien:

If you want to find PTm sites you can use UniMod

CyBase for cyclisation anlysis

RESID Database for modified or non-natural residues

PeptideBuilder for terminal modification