30 Questions 93 Answers 0 Followers
Questions related from Gajendra Pal Singh Raghava
FASTA is best format for repersenting proteins but not suitable to repersent chemically modified peptides like terminal modifications, cyclisation, PTM, non-natural residues. Can you suggest best...
07 May 2025 9,918 3 View
We are in process of creating a platform that maintain link of computational resources required for genetically modified crops (GMCs). I will highly appreciate if you write name of computational...
06 February 2025 516 1 View
We are interested to develop a method for predicting lipid binding proteins, I will highly appreciate if some one write "How to create dataset from PDB or any other database" . Please send link if...
08 September 2023 3,819 0 View
In recent years, number of vaccine have been approved to fight against Covid-19, list of approved is available at FDA site. We are looking for sequence of these vaccine (RNA sequence in case of...
09 July 2023 487 4 View
I am not sure if any one study on this topic. It has been observed in certain cases that success-full researchers have poor academic record. These are exceptions, I am interested to know any...
31 October 2020 5,332 23 View
I am looking for cell penetrating small molecules that can penetrate membrane of cell. I wants to design molecule that can deliver drugs inside a cell. I know number of databases/methods are...
07 June 2020 4,181 7 View
I am looking for non-protein allergens, please write name of database or repository or link maintain list of allergens.
07 June 2020 1,910 4 View
Despite tremendous advancement in the field of vaccine design or immunoinformatics, most of the vaccines under trail against novel coronavirus are based on traditional approach. In most of the...
29 April 2020 1,332 29 View
We are interested to screen molecules particularly peptides that can be delivered orally. Please write name of software or web server which we can use for predicting oral-delivery potential of a...
22 December 2014 7,273 1 View
We are working in bioinformatics and chemoinformatics. We need your help, I will highly appreciate if you suggest best software for mining big data. I will appreciate if you suggest free or open...
02 December 2014 1,837 18 View
Dear Colleagues, we are interested in peptide based drugs approved by FDA so far. We got brief information about these drugs from FDA site, we need more information like amino acid sequence, drug...
17 October 2014 2,788 6 View
As all of us know that Ebola virus is one of the major challenge for researchers community. I hope number of researchers are already working on this dread virus. As well as number of researchers...
15 August 2014 9,765 7 View
Our group is developing web servers in the filed of bioinformatics from last number of years (http://crdd.osdd.net/raghava/ ). In recent years Android apps are becoming very popular among young...
30 May 2014 9,289 11 View
We have dataset containing large numbers of proteins belonging to PDB, SwissProt, TargetDB and unknown sources. We have no idea about their nucleotide sequences, but we are interested in...
15 April 2014 613 16 View
What are the important steps in designing peptide-based drugs? We have anti-cancer peptides that display anticancer activity against a wide range of cancer cell lines. We also checked they are not...
15 December 2013 7,706 5 View
This is live Galaxy of OSDDlinux which integrate most of open sourece software and web services available at OSDDlinux. Overall this Galaxy at OSDDlinux will provide a open source based platform...
14 November 2013 2,138 2 View
We are working on a project OSDDlinux (A customize linux operating system for drug discovery) it is available at http://osddlinux.osdd.net/ . We need your input/feedback on this project from users...
21 September 2013 4,879 3 View
We are looking for experts in the field of scientific computing particularly in datamining. I want to ask whether any database, social media site or resource of experts or researchers exists so...
16 February 2013 8,430 15 View
We are using TableCurve2D for fitting our data. Problem with this software it is windows based and commercial software. We need a free software equivalent TableCurve2d (I mean similar functions)...
20 November 2012 4,153 77 View
I will appreciate if you write your experience in using free software for calculating molecular descriptors. What are important descriptors which are not available in free software but available...
10 November 2012 6,611 5 View
I have seen lot of criticism to every assessing scheme used to evaluate a researcher. It may be impact factor, H-index, g-index or RG score, the community do not agree on any type of score so far....
15 October 2012 946 84 View
We are getting news that grants for research are decreasing every year and same time number of researchers are increasing. In simple words, competition is increasing for getting jobs in the field...
11 October 2012 8,551 12 View
I know that Herceptin is frequently used for treating breast cancer where HER2 is over expressed. I want to know whether we can use this antibody for treating other types of cancers as HER2 also...
19 September 2012 4,828 12 View
I am not well aware about TCM, it is similar to Aurveda medicines. I mean it is extract of plants, I wish to understand type of molecules (mixture of molecules or pure molecules) and their...
10 September 2012 2,721 2 View
We have tested anticancer activity of peptides on cancer cell lines, now we want to measure toxicity of these cell line on normal cell line. We want to know what is normal for human cell line.
04 September 2012 1,709 8 View
We used SVM_light package for binary classification, we are interested to apply best software for classification of our data. Your help will be highly apreciated
02 September 2012 780 9 View
I am interested to know whether there is any software or server which can annotate a genome (sequenced using NGS) from a clinical point of view. I have seen lot of pipline or software that allow...
29 August 2012 7,296 1 View
We are organizing international conference of "Open Source for Computer -Aided Translational medicine", we are looking for suggestions for possible topics and titles of sessions. Our overall...
30 September 2011 2,520 19 View
May I know your views on future of bioinformatics.
22 April 2011 9,310 1 View
Feedback on MAP Format for Chemically Modified Proteins We are in process of developing a new format called MAP (Modifications and Annotations in Proteins) to represent chemically modified...
01 January 1970 3,171 0 View
