I am planing to get two gene together for cloning purpose. My plan is first amplify the gene "x" using a set of primer which will amplify gene x without stop codon. I will amplify another gene "y" having stop codon.
After that I will use both the PCR product (x and y) as template and will use two outer primer (one forward from x and one reverse from y) to get a probable single PCR product of X+Y.