Hi Francesca Urbani . As Sönke Weinert suggested, an image would help us answer your query with more detail. If you use Fiji/ImageJ, you can count the "spots" on your plate, although if you are considering objects in several wells of the plate, you might have to count spots in each well separately. Are the spots fluorescent?
On hindsight, if you haven't used ImageJ before, it's not too late to start learning how it works. FIJI/ImageJ is free, open-source software. You can download it from here: https://fiji.sc/.
If you are interested, my YouTube channel features tutorials on various image processing and analysis questions. You may find the solution to your questions in one of my videos. https://www.youtube.com/channel/UCFKPbB-h1GbuOG9gwD1tXEA.
I know you are asking for a “free” software. But you might want to keep in mind that such software is based on image processing usually causing biases that affect your results and reproducibility. In the case of ELISpot, that means biased spot counts due to incorrect spot center assignments or variable spot sizes.
Learn more about why Mabtech has developed a novel spot counting algorithm in this video https://www.youtube.com/watch?v=AOPy8cuS4EAor on our website https://www.mabtech.com/.
If you are curious about exploring the benefits of an automatized spot counting reader, don’t hesitate to contact my colleagues at Mabtech ([email protected]). We would be happy to arrange a first free plate reading for you.