I have genomic sequences of a gene having putative annotation on ensemble. i want to know which type of introns it contain, i.e. type-I, II, III or IV. etc.
Dear naveed,
you can try the tools mentioned in the given link
http://www.phenosystems.com/www/index.php/links-to-various-tools-and-information/splice-prediction-tools
The above recommended site is great but I found another one that is little bit relevant to splicing defect prediction:
omictools.com/splicing-defect-prediction-category
http://www.umd.be/HSF/
and
Thanks Dear all.
I know the splicing site but wana know which type of introns they may be. i.e type I , type II, type III or type IV intron.
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