I have full mitochondrial genome data for 286 individuals and I formatted it from a nexus file into a blank arlequin project file I created. According to the log file everything runs well. My populations are defined and the haplotype definitions are successfully read, but when I get to the data the branches of the tree file are absolutely blank. Any suggestions?
yea sorry I didn't specify. There are xml files, but those are empty. I call it the tree because the main file is called the tree file, which contains all the xmls you have run on a project and the log file. The xml files are empty for some reason and I can't get them to work with any dataset, but the log shows that the datasets were run properly. I even installed a different version of Arlequin (older) to see if it's the specific installation that didn't work.
Did this problem get resolved, and if so, how? I'm having the same problem. I made my Arlequin input file by converting from a genepop file.
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