I have linked Arlequin to rcmd, and even downgraded my version of R to 3.0.1, however the rmcd button results in the black panel flashing for a second or two and no produced images in the Graphics folder.
My analysis ran to completion as per the log file, but when I view the XML in firefox it says:
XML Parsing Error:
Location: file:///C:/Users/leahm/Downloads/arlequin%20sample/arlequin%20sample/output.res/output.xml
Line Number 19892501, Column 38:
Locus784\Locus1337| A| T|
Hello Leah,
I hope you could solve the issue.
BUt just in case:
1st Issue:
Rfunctions compatibility with R version>
I could solve it upgrading Rfunctions folder from software website:
http://cmpg.unibe.ch/software/arlequin35/R/Rfunctions.zip
This new Rfuntions includes scripts and compatibility for R_2.11, R_2.12, R_3.0, R_3.5 & R_4.0.
2nd Issue:
Firefox compatibility:
Edit Firefox settings as follows:
1) Type about:config in Firefox address bar
2) Change security.fileuri.strict_origin_policy to false
Following these steps I could obtain graphics from XML files using Firefox 114.0.2 (64-bit).
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