I am trying to run AMOVA and Fst using Arlequin with a aligned FASTA. I generated output.arp file using Rstudio and then uploaded as a project on Arlequin, however, my output file (output.xml) shows an error saying
“#[ERROR # 1] : invalid DNA data
#[ERROR # 2] : unable to read sample data
#[ERROR # 3] : unable to read sample data”
My alignment file has ATGC nucleotides and are all clean sequences.
Does anyone know what could be wrong with the files? Please see attached
Thanks