Which one is a good binning tool for constructing metagenomically-assembled genomes?

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Abhijeet Singh

Metabat2.

Ishtiaque Ahammad

Abhijeet Singh thanks! I have tried both Metabat2 and Maxbin2. Metabat2 seems more updated however it doesn't give any "coverage" in the output unlike Maxbin2. Do you know how to extract that info from a Metabat2 assembled bin?

Use CheckM for that.

Thank you!