Which is a good DNA multiple alignment software which is free too?

More Divya Rana's questions See All

For allele frequency determination, is it good to take samples from a college/school or a hospital or any other technique??

I am trying to determine allele frequency of a hla allele. Preliminary analysis shows the prevalence of the allele (homo or heterozygous both) is 3%. The allele is related to a disease (After...

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Multiplex SYBR Green real time PCR, melting tempearture not resolvable?

Dear Sirs, I am trying to do multiplex real-time PCR with SYBR Green. I had 4 different pcr products. But the difference of melting temperature of products are not different. At least by the...

03 April 2016 6,627 3 View

Any advice on Rotor Gene Q real time PCR endpoint analysis method positive/negative result validity accuracy?

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10 November 2015 3,297 0 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What degree of missing data in a particular case/participant results in Expectation-Maximisation no longer working?

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Does anyone know HRM channel in a 2 plex QIAGEN Rotor- Gene Q qPCR can be used as a separate channel?

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01 March 2021 8,544 1 View

Can we distinguish the type of free fluid inside the pelvic and abdominal cavities whether blood or serous fluid using the ultrasound?

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Which cell line should we use to perform biological dosimetry experiments?

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How to calculate Ligand-active site distance in a ligand-protein complex from MD simulation?

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Calculating volume of DNA required from DNA concentration?

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Has anyone used the Illumina ITS1 primer sets?

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Is there an open source free software for text mining and sentiment analysis?

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Which are the journals for free paper publication?

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Ninnet Gómez-Romero

Dear Divya,

You can download BioEdit for free.

Hope this helps

Tamas Kerekes

Hi Divya,

This web-based free tool is very good for sequence aligments. A bit easy, but for the purpose is very good. I've used it many times. Just add your sequences in FASTA format under each other then click on "Submit" button.

Clustal Omega

https://www.ebi.ac.uk/Tools/msa/clustalo/

P.S. : It's the successor of the ClustalW

Bests,

Tamas

Divya Rana

Thanks Ninnet, David and Tamas.

I have been using bioedit but I think I need a better one. I wanted something that functions similar to what bioedit does (I wanted to use control+F function within the software.). Bioedit has clustalW, I wanted to know how other modifications are more helpful. I will try to see what you have mentioned. So helpful.

Divya