We want to do transcriptome and phosphoproteome analyses of the same sample and have limited material. So a simultaneous extraction method for both (RNA and protein), such as Trizol or Methanol/Chloroform extraction would be the way to go. Anybody here with experience using one or the other protocol? Which one would you recommend for small sample amount? Are they both suitable for high quality transcriptome and phosphoproteome analyses? Any suggestions are appreciated.