How to retrieve the associated diseases for a list of reference SNPs?

I have a list of reference SNPs IDs (rsid) and I need to retrieve the associated diseases ... what are the suitable bioinformatics tools or databases?

01 February 2020 4,835 1 View

How to get a Phased VCF file?

Can I phase VCF file after it has been generated ? Or I must have a phased BAM to get a phased VCF? Which tool is best used for this purpose?

09 October 2018 668 0 View

Gene list - disease association ?

I have a gene list and want to map it to human diseases to know what are the most probable disease relates to my list. What is the best bioinformatics tool to do this job?

05 June 2018 3,581 1 View

Is there a complete list of files used in the field of "omics" ?

I find different types of files in field of bioinformatics ... where can I find a complete list and description for these files?

02 March 2018 1,119 0 View

23 &Me variant names and genotypes ?

In 23&Me files for personal genetics services, I found some genetic variants named like (i6033918) and the genotype is (II). What does this mean?

09 October 2017 5,625 3 View

Where to find a database linking genetics and facial topology?

?

31 December 2016 9,682 1 View

Where to find a list of activators and inhibitors of an enzyme ?

I need a downloadable list of structures of activators and inhibitors of a certain enzyme ... where can I find a database containing this data ?

08 September 2016 325 4 View

How to detect the best variant affecting patient's response to a drug?

I detected a set of patients that have a high response to a drug. Each patient has 40 different reads ( 20 nominal and 20 continuous) resemble certain genetic and expression variations. How should...

03 April 2016 422 3 View

Some bioinformatics tools need Linux platform, others need Windows. What can I do for this?

Does anyone have an experience in getting Windows and Linux on the same computer (Laptop)?

10 November 2014 8,696 5 View

Is there a source where I can find the 3D structures of the different protein alleles?

I need 3d structures of different alleles of the same protein.

10 November 2014 1,115 3 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View