What codes exist for generating long sequences of single stranded DNA base pairs?

05 May 2013 1 2K Report

I need to generate random sequences of base pairs for single stranded DNA. I only need to generate the atomic coordinates (no need to optimize the structure), and so I'm looking for software to do this.

Uttam Pal

Try this server: http://haddock.chem.uu.nl/services/3DDART/

I've used it a few times. It's good. There are other servers as well such as http://w3dna.rutgers.edu/index.php/rebuild.

These will generate a double stranded DNA. You can easily remove one chain in PyMol or in a simple text editor (notepad/gedit).

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