I ran a 1 % agarose gel with Ethidium Bromide to detect DNA. When analysing under UV I see bands but I also have a very dark zone impeding visualization of the migration
What causes dark zone in agarose gel ? I am attaching the image of the same.
Ethidium bromide runs in the opposite direction of your DNA, so what you see is the lack of EtBr in the lower part of your gel (I am assuming that the left side of the image is the lower part of your gel).