I am using TaqMan probes for SNP genotyping on LightCycler 480. I am facing some difficulties in resolution of heterozygous genotypes. The software can not identify it as " both alleles" automatically. I am using Universal TaqMan master mix with UNG.
Can anyone suggest me if including UNG activation in cycling conditions will make any difference in fluorescence call of FAM or VIC dye?
Other suggestions?